EvoClustRNA
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EvoClustRNA
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Welcome to EvoClustRNA documentation!¶

Marcin Magnus & Rhiju Das

The code of the project can be found at GitHub (https://github.com/mmagnus/EvoClustRNA)

A clustering routines of evolutionary conserved regions (helical regions) for RNA fold prediction.

At the moment we are testing the apprach using models from Rosetta FARFAR (https://www.rosettacommons.org/) and SimRNAweb (http://genesilico.pl/SimRNAweb/).

The documentation can be found here http://evoclustrna.readthedocs.io/en/latest/

Contents:

  • Get Started
    • Prepare a multiple sequence alignment (MSA)
    • RNA 3D structure prediction to generate initial models
    • Run EvoClustRNA clustering procedure (including extraction of conserved motifs)
    • Compare to the reference structure
    • [Example of post-EvoClustRNA analysis]
  • Adv
    • RNA 3D structure prediction
    • evoClustRNA
      • Named Arguments
    • evoClust_autoclustix.py
      • Positional Arguments
      • Named Arguments
      • Positional Arguments
      • Named Arguments
    • evoClust_get_models.py
      • Positional Arguments
      • Named Arguments
    • Python Classes used in the scripts
      • RNAmodel
      • RNAalignment
  • Installation

Indices and tables¶

  • Index
  • Module Index
  • Search Page
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© Copyright Marcin Magnus Revision 19e1af35.

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