Welcome to EvoClustRNA documentation!

Marcin Magnus & Rhiju Das

The code of the project can be found at GitHub (https://github.com/mmagnus/EvoClustRNA)

A clustering routines of evolutionary conserved regions (helical regions) for RNA fold prediction.

At the moment we are testing the apprach using models from Rosetta FARFAR (https://www.rosettacommons.org/) and SimRNAweb (http://genesilico.pl/SimRNAweb/).

The documentation can be found here http://evoclustrna.readthedocs.io/en/latest/

Contents:

• Get Started
  • Prepare a multiple sequence alignment (MSA)
  • RNA 3D structure prediction to generate initial models
  • Run EvoClustRNA clustering procedure (including extraction of conserved motifs)
  • Compare to the reference structure
  • [Example of post-EvoClustRNA analysis]
• Adv
  • RNA 3D structure prediction
  • evoClustRNA
    • Named Arguments
  • evoClust_autoclustix.py
    • Positional Arguments
    • Named Arguments
    • Positional Arguments
    • Named Arguments
  • evoClust_get_models.py
    • Positional Arguments
    • Named Arguments
  • Python Classes used in the scripts
    • RNAmodel
    • RNAalignment
• Installation

Indices and tables

• Index
• Module Index
• Search Page